Annotator

Get annotations for ecological text with classes from the semantic resources

Match longest only Match partial words Include mappings Exclude numbers Exclude synonyms

Select semantic resources

Select UMLS semantic types

Include ancestors up to level:

Class filter	Semantic Resource filter	Type filter	UMLS Sem Type	Context	Matched Class filter	Matched Semantic Resource filter

Format results as:

To reproduce these results:

Additional parameters are documented at Annotator Web Service

	Select all filtered ontologies (show all)
	AGROVOC (AGROVOC)
	Alien Species Thesaurus (ALIENSPECIES)
	Audubon Core Controlled Vocabulary for Dublin Core format (ACFORMAT)
	Audubon Core subtype Controlled Vocabulary (ACSUBTYPE)
	Audubon Core variant Controlled Vocabulary (ACVARIANT)
	BioCollections Ontology (BCO)
	Biodiversity Thesaurus (BIODIVTHES)
	Darwin Core Degree of Establishment Controlled Vocabulary (DWCDOE)
	Darwin Core Establishment Means Controlled Vocabulary (DWCEM)
	Darwin Core Pathway Controlled Vocabulary (DWCPW)
	Darwin-SW (DSW)
	Endemisms Thesaurus (ENDEMISMS)
	Environmental Thesaurus (ENVTHES)
	eurio (EURIO)
	EuroSciVoc (EUROSCIVOC)
	EuroVoc Core Concepts (EUROVOC)
	Fish Traits Thesaurus (FISHTRAITS)
	LifeWatch ERIC Upper Ontology (LUPO)
	Macroalgae Traits Thesaurus (MACROALGAETRAITS)
	Marine Regions ontology (MR)
	Marine Regions PlaceTypes code list (MRPTCODELIST)
	Phytoplankton Traits Thesaurus (PHYTOTRAITS)
	Population and Community Ontology (PCO)
	Semantic Types Ontology (STY)
	Zooplankton Traits Thesaurus (ZOOPLANKTRAITS)